What’s New

New in AutoAnnotate 1.4

  • Requires Cytoscape 3.9
  • Display option for fill color palettes.
  • Display option for cluster padding.
  • Summary networks have improved attribute aggregation.
    • Attribute aggregation now works for edges as well as nodes.
    • There is a new settings dialog that shows when creating a summary network.
    • Attribute aggregation settings can be specified for each individual column.
  • Summary networks have improved integration with the EnrichmentMap App.
    • New default aggregators for EnrichmentMap columns that make more sense.
    • Summary networks work with the EnrichmentMap Heat Map panel.
  • Improved support for hidden nodes and edges.
    • Hiding nodes causes the clusters to resize to the visible nodes.
    • Hidden nodes and edges are ignored by clustering algorithms.
  • Several bug fixes

New in AutoAnnotate 1.3

  • Requires Cytoscape 3.7
  • Drawing annotations is much faster
  • Word Wrap feature for cluster labels
  • New Feature: copy annotations to another network
  • Support for column namespaces
  • “annotate” command now returns JSON
  • Cleaner layout for “quick start” panel
  • Cleaner layout for “display options” panel
  • Cleaner menu layouts
  • Several bug fixes