Minimum versions (latest versions are recommended):

Package Minimum Version
Cytoscape 3.7.0
WordClound 3.1.0
clusterMaker2 0.9.5


Install Cytoscape

Install AutoAnnotate 1.3

  • Open Cytoscape
  • In the main menu select Apps > App Manager
  • In the App Manager select AutoAnnotate in the list of All Apps and click the Install button.
  • WordCloud and clusterMaker2 will also be installed automatically along with AutoAnnotate

Alternatively the apps can be installed from the App Store.